VTK  9.3.0
vtkMoleculeMapper.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
24#ifndef vtkMoleculeMapper_h
25#define vtkMoleculeMapper_h
26
27#include "vtkDomainsChemistryModule.h" // For export macro
28#include "vtkMapper.h"
29#include "vtkNew.h" // For vtkNew
30
31VTK_ABI_NAMESPACE_BEGIN
32class vtkActor;
34class vtkIdTypeArray;
35class vtkMolecule;
37class vtkPolyData;
39class vtkRenderer;
40class vtkSelection;
41class vtkSphereSource;
43
44class VTKDOMAINSCHEMISTRY_EXPORT vtkMoleculeMapper : public vtkMapper
45{
46public:
49 void PrintSelf(ostream& os, vtkIndent indent) override;
50
52
58
71
84
97
113
115
118 vtkGetMacro(RenderAtoms, bool);
119 vtkSetMacro(RenderAtoms, bool);
120 vtkBooleanMacro(RenderAtoms, bool);
122
124
127 vtkGetMacro(RenderBonds, bool);
128 vtkSetMacro(RenderBonds, bool);
129 vtkBooleanMacro(RenderBonds, bool);
131
133
137 vtkGetMacro(RenderLattice, bool);
138 vtkSetMacro(RenderLattice, bool);
139 vtkBooleanMacro(RenderLattice, bool);
141
142 enum
143 {
144 CovalentRadius = 0,
147 CustomArrayRadius
148 };
149
151
156 vtkGetMacro(AtomicRadiusType, int);
157 vtkSetMacro(AtomicRadiusType, int);
159 void SetAtomicRadiusTypeToCovalentRadius() { this->SetAtomicRadiusType(CovalentRadius); }
160 void SetAtomicRadiusTypeToVDWRadius() { this->SetAtomicRadiusType(VDWRadius); }
161 void SetAtomicRadiusTypeToUnitRadius() { this->SetAtomicRadiusType(UnitRadius); }
162 void SetAtomicRadiusTypeToCustomArrayRadius() { this->SetAtomicRadiusType(CustomArrayRadius); }
164
166
171 vtkGetMacro(AtomicRadiusScaleFactor, float);
172 vtkSetMacro(AtomicRadiusScaleFactor, float);
174
176
180 vtkGetMacro(UseMultiCylindersForBonds, bool);
181 vtkSetMacro(UseMultiCylindersForBonds, bool);
182 vtkBooleanMacro(UseMultiCylindersForBonds, bool);
184
185 enum
186 {
187 SingleColor = 0,
188 DiscreteByAtom
189 };
190
192
202 vtkGetMacro(BondColorMode, int);
203 vtkSetClampMacro(BondColorMode, int, SingleColor, DiscreteByAtom);
204 void SetBondColorModeToSingleColor() { this->SetBondColorMode(SingleColor); }
205 void SetBondColorModeToDiscreteByAtom() { this->SetBondColorMode(DiscreteByAtom); }
208
210
219 vtkGetMacro(AtomColorMode, int);
220 vtkSetClampMacro(AtomColorMode, int, SingleColor, DiscreteByAtom);
222
224
228 vtkGetVector3Macro(AtomColor, unsigned char);
229 vtkSetVector3Macro(AtomColor, unsigned char);
231
233
237 vtkGetVector3Macro(BondColor, unsigned char);
238 vtkSetVector3Macro(BondColor, unsigned char);
240
242
245 vtkGetMacro(BondRadius, float);
246 vtkSetMacro(BondRadius, float);
248
250
254 vtkGetVector3Macro(LatticeColor, unsigned char);
255 vtkSetVector3Macro(LatticeColor, unsigned char);
257
259
264 vtkSelection* selection, vtkIdTypeArray* atomIds, vtkIdTypeArray* bondIds);
265 virtual void GetSelectedAtoms(vtkSelection* selection, vtkIdTypeArray* atomIds)
266 {
267 this->GetSelectedAtomsAndBonds(selection, atomIds, nullptr);
268 }
269 virtual void GetSelectedBonds(vtkSelection* selection, vtkIdTypeArray* bondIds)
270 {
271 this->GetSelectedAtomsAndBonds(selection, nullptr, bondIds);
272 }
274
276
279 void Render(vtkRenderer*, vtkActor*) override;
281 double* GetBounds() override;
282 void GetBounds(double bounds[6]) override { Superclass::GetBounds(bounds); }
283 int FillInputPortInformation(int port, vtkInformation* info) override;
284 bool GetSupportsSelection() override { return true; }
286
288
292 vtkGetStringMacro(AtomicRadiusArrayName);
293 vtkSetStringMacro(AtomicRadiusArrayName);
295
300 virtual void SetMapScalars(bool map);
301
305 vtkPeriodicTable* GetPeriodicTable() { return this->PeriodicTable; }
306
307protected:
310
312
320 unsigned char AtomColor[3];
322
324
331 unsigned char BondColor[3];
333
335
340
342
350 virtual void UpdateGlyphPolyData();
354
356
362
363 unsigned char LatticeColor[3];
366 virtual void UpdateLatticePolyData();
367
372
373private:
374 vtkMoleculeMapper(const vtkMoleculeMapper&) = delete;
375 void operator=(const vtkMoleculeMapper&) = delete;
376};
377
378VTK_ABI_NAMESPACE_END
379#endif
virtual double * GetBounds()=0
Return bounding box (array of six doubles) of data expressed as (xmin,xmax, ymin,ymax,...
represents an object (geometry & properties) in a rendered scene
Definition vtkActor.h:50
vtkGlyph3D on the GPU.
dynamic, self-adjusting array of vtkIdType
a simple class to control print indentation
Definition vtkIndent.h:38
Store vtkAlgorithm input/output information.
abstract class specifies interface to map data to graphics primitives
Definition vtkMapper.h:86
Mapper that draws vtkMolecule objects.
virtual void GetSelectedBonds(vtkSelection *selection, vtkIdTypeArray *bondIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
const char * GetBondColorModeAsString()
Get/Set the method by which bonds are colored.
virtual void GetSelectedAtoms(vtkSelection *selection, vtkIdTypeArray *atomIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
virtual void SetMapScalars(bool map)
Helper method to set ScalarMode on both AtomGlyphMapper and BondGlyphMapper.
void SetBondColorModeToDiscreteByAtom()
Get/Set the method by which bonds are colored.
void SetAtomicRadiusTypeToUnitRadius()
Get/Set the type of radius used to generate the atoms.
bool GlyphDataInitialized
Cached variables and update methods.
vtkNew< vtkGlyph3DMapper > AtomGlyphMapper
Internal mappers.
bool RenderAtoms
Customize atom rendering.
vtkPeriodicTable * GetPeriodicTable()
Accessor to internal structure.
void SetAtomicRadiusTypeToVDWRadius()
Get/Set the type of radius used to generate the atoms.
void UseLiquoriceStickSettings()
Set ivars to default liquorice stick settings.
vtkNew< vtkPeriodicTable > PeriodicTable
Periodic table for lookups.
float AtomicRadiusScaleFactor
Customize atom rendering.
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
virtual void GetSelectedAtomsAndBonds(vtkSelection *selection, vtkIdTypeArray *atomIds, vtkIdTypeArray *bondIds)
Extract the ids atoms and/or bonds rendered by this molecule from a vtkSelection object.
float BondRadius
Customize bond rendering.
~vtkMoleculeMapper() override
int AtomicRadiusType
Customize atom rendering.
bool RenderBonds
Customize bond rendering.
void Render(vtkRenderer *, vtkActor *) override
Reimplemented from base class.
void SetAtomicRadiusTypeToCustomArrayRadius()
Get/Set the type of radius used to generate the atoms.
void SetAtomicRadiusTypeToCovalentRadius()
Get/Set the type of radius used to generate the atoms.
char * AtomicRadiusArrayName
Customize atom rendering.
int FillInputPortInformation(int port, vtkInformation *info) override
Reimplemented from base class.
static vtkMoleculeMapper * New()
virtual void UpdateAtomGlyphPolyData()
Cached variables and update methods.
int AtomColorMode
Customize atom rendering.
double * GetBounds() override
Reimplemented from base class.
virtual void UpdateGlyphPolyData()
Cached variables and update methods.
vtkNew< vtkPolyData > BondGlyphPolyData
Cached variables and update methods.
vtkNew< vtkTrivialProducer > BondGlyphPointOutput
Cached variables and update methods.
void UseFastSettings()
Set ivars to use fast settings that may be useful for rendering extremely large molecules where the o...
void SetBondColorModeToSingleColor()
Get/Set the method by which bonds are colored.
bool UseMultiCylindersForBonds
Customize bond rendering.
bool GetSupportsSelection() override
Reimplemented from base class.
const char * GetAtomicRadiusTypeAsString()
Get/Set the type of radius used to generate the atoms.
vtkNew< vtkGlyph3DMapper > BondGlyphMapper
Internal mappers.
vtkMolecule * GetInput()
Get/Set the input vtkMolecule.
void SetInputData(vtkMolecule *in)
Get/Set the input vtkMolecule.
virtual void UpdateLatticePolyData()
void UseBallAndStickSettings()
Set ivars to default ball-and-stick settings.
void GlyphRender(vtkRenderer *ren, vtkActor *act)
Internal render methods.
int BondColorMode
Customize bond rendering.
void ReleaseGraphicsResources(vtkWindow *) override
Reimplemented from base class.
void UseVDWSpheresSettings()
Set ivars to default van der Waals spheres settings.
vtkNew< vtkTrivialProducer > AtomGlyphPointOutput
Cached variables and update methods.
void GetBounds(double bounds[6]) override
Reimplemented from base class.
virtual void UpdateBondGlyphPolyData()
Cached variables and update methods.
vtkNew< vtkPolyDataMapper > LatticeMapper
vtkNew< vtkPolyData > LatticePolyData
vtkNew< vtkPolyData > AtomGlyphPolyData
Cached variables and update methods.
class describing a molecule
Definition vtkMolecule.h:84
Allocate and hold a VTK object.
Definition vtkNew.h:60
Access to information about the elements.
map vtkPolyData to graphics primitives
concrete dataset represents vertices, lines, polygons, and triangle strips
Definition vtkPolyData.h:89
abstract specification for renderers
Definition vtkRenderer.h:68
data object that represents a "selection" in VTK.
create a polygonal sphere centered at the origin
Producer for stand-alone data objects.
window superclass for vtkRenderWindow
Definition vtkWindow.h:34